COUSIN Workshop

COUSIN Workshop Website

Welcome to the COUSIN Workshop Website.
This platform gathers all the documentation and tutorials required for researchers, engineers, and students working on the COUSIN project.

It is designed to support two main areas:

  1. 🌿 Germinate Data Importation → for biological dataset management.

  2. ⚙️ Data Pipelines & Airflow → for automation, reproducibility, and scalability of workflows.

📑 Workshop Contents

1. Germinate Data Importation User Guide

Learn how to prepare and upload data into Germinate using templates and structured processes.

This section covers:

  • ✅ Before you start

  • 📂 Template files (Passport, Trials, Environmental data)

  • ⬆️ Uploading process

  • 📝 Final considerations

👉 Read the Guide

2. Data Pipelines in COUSIN (Airflow Workshop)

Understand how data pipelines are designed and orchestrated with Apache Airflow in the COUSIN project.

This section covers:

  • 🎯 Objectives and high-level architecture

  • 🔄 Pipeline stages (ETL)

  • 🧩 Apache Airflow concepts and example DAGs

  • 🐳 Deployment with Docker

👉 Explore the Pipelines

🙌 Acknowledgment

This workshop is part of COUSIN WP5 efforts, led by:

  • José Felipe Ortega Soto (WP leader)
  • Stephan Weise (WP Leader)

📌 Use the navigation bar or links above to access the specific guides.